HL_8EVQ_053
3D structure
- PDB id
- 8EVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- AAUUCAUUUU
- Length
- 10 nucleotides
- Bulged bases
- 8EVQ|1|A1|U|2537, 8EVQ|1|A1|A|2540, 8EVQ|1|A1|U|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVQ_053 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3912
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EVQ|1|A1|A|2535
8EVQ|1|A1|A|2536
8EVQ|1|A1|U|2537
8EVQ|1|A1|U|2538
8EVQ|1|A1|C|2539
8EVQ|1|A1|A|2540
8EVQ|1|A1|U|2541
8EVQ|1|A1|U|2542
8EVQ|1|A1|U|2543
8EVQ|1|A1|U|2544
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain BB
- RPS1A isoform 1
Coloring options: