HL_8EVQ_093

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EVQ|1|B5|G|656, 8EVQ|1|B5|C|658, 8EVQ|1|B5|G|676, 8EVQ|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVQ|1|B5|U|649
8EVQ|1|B5|U|650
8EVQ|1|B5|G|651
8EVQ|1|B5|G|652
8EVQ|1|B5|C|653
8EVQ|1|B5|C|654
8EVQ|1|B5|G|655
8EVQ|1|B5|G|656
8EVQ|1|B5|U|657
8EVQ|1|B5|C|658
8EVQ|1|B5|G|676
8EVQ|1|B5|G|677
8EVQ|1|B5|A|678
8EVQ|1|B5|U|679
8EVQ|1|B5|U|680
8EVQ|1|B5|U|681
8EVQ|1|B5|C|682
8EVQ|1|B5|C|683
8EVQ|1|B5|A|684
8EVQ|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1