HL_8EVQ_101

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8EVQ|1|B5|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_101 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.425

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVQ|1|B5|U|1055
8EVQ|1|B5|U|1056
8EVQ|1|B5|U|1057
8EVQ|1|B5|U|1058
8EVQ|1|B5|U|1059
8EVQ|1|B5|U|1060
8EVQ|1|B5|A|1061
8EVQ|1|B5|A|1062
8EVQ|1|B5|U|1063
8EVQ|1|B5|G|1064

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain Bb

40S ribosomal protein S27-A