HL_8EVQ_109

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8EVQ|1|B5|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_109 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.445

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8EVQ|1|B5|U|1396
8EVQ|1|B5|U|1397
8EVQ|1|B5|U|1398
8EVQ|1|B5|C|1399
8EVQ|1|B5|A|1400
8EVQ|1|B5|A|1401
8EVQ|1|B5|G|1402

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A

Chain Bg

Guanine nucleotide-binding protein subunit beta-like protein