HL_8EVR_068

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8EVR|1|A1|G|3116, 8EVR|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVR_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0688

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8EVR|1|A1|C|3110
8EVR|1|A1|U|3111
8EVR|1|A1|G|3112
8EVR|1|A1|A|3113
8EVR|1|A1|A|3114
8EVR|1|A1|C|3115
8EVR|1|A1|G|3116
8EVR|1|A1|C|3117
8EVR|1|A1|C|3118
8EVR|1|A1|U|3119
8EVR|1|A1|C|3120
8EVR|1|A1|U|3121
8EVR|1|A1|A|3122
8EVR|1|A1|A|3123
8EVR|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

Ubiquitin-60S ribosomal protein L40