HL_8EVR_081

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EVR|1|B5|U|192, 8EVR|1|B5|U|193, 8EVR|1|B5|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVR_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3305

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EVR|1|B5|C|186
8EVR|1|B5|G|187
8EVR|1|B5|A|188
8EVR|1|B5|C|189
8EVR|1|B5|C|190
8EVR|1|B5|C|191
8EVR|1|B5|U|192
8EVR|1|B5|U|193
8EVR|1|B5|U|194
8EVR|1|B5|G|195
8EVR|1|B5|G|196
8EVR|1|B5|A|197
8EVR|1|B5|A|198
8EVR|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A