HL_8EVR_093

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EVR|1|B5|G|656, 8EVR|1|B5|C|658, 8EVR|1|B5|G|676, 8EVR|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVR|1|B5|U|649
8EVR|1|B5|U|650
8EVR|1|B5|G|651
8EVR|1|B5|G|652
8EVR|1|B5|C|653
8EVR|1|B5|C|654
8EVR|1|B5|G|655
8EVR|1|B5|G|656
8EVR|1|B5|U|657
8EVR|1|B5|C|658
8EVR|1|B5|G|676
8EVR|1|B5|G|677
8EVR|1|B5|A|678
8EVR|1|B5|U|679
8EVR|1|B5|U|680
8EVR|1|B5|U|681
8EVR|1|B5|C|682
8EVR|1|B5|C|683
8EVR|1|B5|A|684
8EVR|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1