HL_8EVR_100
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UGAUCAGAUAC(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 8EVR|1|B5|U|1004
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVR_100 not in the Motif Atlas
- Geometric match to HL_5AXM_001
- Geometric discrepancy: 0.3533
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8EVR|1|B5|U|996
8EVR|1|B5|G|997
8EVR|1|B5|A|998
8EVR|1|B5|U|999
8EVR|1|B5|C|1000
8EVR|1|B5|A|1001
8EVR|1|B5|G|1002
8EVR|1|B5|A|1003
8EVR|1|B5|U|1004
8EVR|1|B5|A|1005
8EVR|1|B5|C|1006
8EVR|1|B5|OMC|1007
8EVR|1|B5|G|1008
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
- Chain EC
- TSV IRES
Coloring options: