HL_8EVS_012

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

8EVS|1|A1|G|542, 8EVS|1|A1|U|545, 8EVS|1|A1|C|546, 8EVS|1|A1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|A1|U|540
8EVS|1|A1|U|541
8EVS|1|A1|G|542
8EVS|1|A1|C|543
8EVS|1|A1|C|544
8EVS|1|A1|U|545
8EVS|1|A1|C|546
8EVS|1|A1|G|547
8EVS|1|A1|G|548
8EVS|1|A1|U|549
8EVS|1|A1|A|550
8EVS|1|A1|A|551

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A