HL_8EVS_023

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUCCGGGGUCACCUUGA

Length

17 nucleotides

Bulged bases

8EVS|1|A1|C|1016, 8EVS|1|A1|A|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|A1|U|1014
8EVS|1|A1|U|1015
8EVS|1|A1|C|1016
8EVS|1|A1|C|1017
8EVS|1|A1|G|1018
8EVS|1|A1|G|1019
8EVS|1|A1|G|1020
8EVS|1|A1|G|1021
8EVS|1|A1|U|1022
8EVS|1|A1|C|1023
8EVS|1|A1|A|1030
8EVS|1|A1|C|1031
8EVS|1|A1|C|1032
8EVS|1|A1|U|1033
8EVS|1|A1|U|1034
8EVS|1|A1|G|1035
8EVS|1|A1|A|1036

Current chains

Chain A1

25S rRNA

Nearby chains

Chain EC

TSV IRES