HL_8EVS_035

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8EVS|1|A1|U|1606, 8EVS|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.071

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8EVS|1|A1|G|1599
8EVS|1|A1|U|1600
8EVS|1|A1|U|1601
8EVS|1|A1|A|1602
8EVS|1|A1|A|1603
8EVS|1|A1|G|1604
8EVS|1|A1|A|1605
8EVS|1|A1|U|1606
8EVS|1|A1|U|1607
8EVS|1|A1|C|1608

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AX

60S ribosomal protein L25

Chain Ag

60S ribosomal protein L34-A