HL_8EVS_044

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGGGUACG

Length

8 nucleotides

Bulged bases

8EVS|1|A1|G|1954, 8EVS|1|A1|U|1955, 8EVS|1|A1|A|2093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_044 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1937

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8EVS|1|A1|C|1951
8EVS|1|A1|G|1952
8EVS|1|A1|G|1953
8EVS|1|A1|G|1954
8EVS|1|A1|U|1955
8EVS|1|A1|A|2093
8EVS|1|A1|C|2094
8EVS|1|A1|G|2095

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A