HL_8EVS_053
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AAUUCAUUUU
- Length
- 10 nucleotides
- Bulged bases
- 8EVS|1|A1|U|2537, 8EVS|1|A1|A|2540, 8EVS|1|A1|U|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVS_053 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3521
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8EVS|1|A1|A|2535
8EVS|1|A1|A|2536
8EVS|1|A1|U|2537
8EVS|1|A1|U|2538
8EVS|1|A1|C|2539
8EVS|1|A1|A|2540
8EVS|1|A1|U|2541
8EVS|1|A1|U|2542
8EVS|1|A1|U|2543
8EVS|1|A1|U|2544
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain BB
- RPS1A isoform 1
Coloring options: