HL_8EVS_059
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- U(OMU)UCAG(OMU)GUGA
- Length
- 11 nucleotides
- Bulged bases
- 8EVS|1|A1|A|2727
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVS_059 not in the Motif Atlas
- Geometric match to HL_6UGG_005
- Geometric discrepancy: 0.3783
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8EVS|1|A1|U|2723
8EVS|1|A1|OMU|2724
8EVS|1|A1|U|2725
8EVS|1|A1|C|2726
8EVS|1|A1|A|2727
8EVS|1|A1|G|2728
8EVS|1|A1|OMU|2729
8EVS|1|A1|G|2730
8EVS|1|A1|U|2731
8EVS|1|A1|G|2732
8EVS|1|A1|A|2733
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
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