HL_8EVS_081

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EVS|1|B5|C|191, 8EVS|1|B5|U|192, 8EVS|1|B5|U|193, 8EVS|1|B5|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3038

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EVS|1|B5|C|186
8EVS|1|B5|G|187
8EVS|1|B5|A|188
8EVS|1|B5|C|189
8EVS|1|B5|C|190
8EVS|1|B5|C|191
8EVS|1|B5|U|192
8EVS|1|B5|U|193
8EVS|1|B5|U|194
8EVS|1|B5|G|195
8EVS|1|B5|G|196
8EVS|1|B5|A|197
8EVS|1|B5|A|198
8EVS|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A