HL_8EVS_093

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EVS|1|B5|G|656, 8EVS|1|B5|C|658, 8EVS|1|B5|G|676, 8EVS|1|B5|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVS|1|B5|U|649
8EVS|1|B5|U|650
8EVS|1|B5|G|651
8EVS|1|B5|G|652
8EVS|1|B5|C|653
8EVS|1|B5|C|654
8EVS|1|B5|G|655
8EVS|1|B5|G|656
8EVS|1|B5|U|657
8EVS|1|B5|C|658
8EVS|1|B5|G|676
8EVS|1|B5|G|677
8EVS|1|B5|A|678
8EVS|1|B5|U|679
8EVS|1|B5|U|680
8EVS|1|B5|U|681
8EVS|1|B5|C|682
8EVS|1|B5|C|683
8EVS|1|B5|A|684
8EVS|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1