HL_8EVT_035

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8EVT|1|A1|U|1606, 8EVT|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0839

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8EVT|1|A1|G|1599
8EVT|1|A1|U|1600
8EVT|1|A1|U|1601
8EVT|1|A1|A|1602
8EVT|1|A1|A|1603
8EVT|1|A1|G|1604
8EVT|1|A1|A|1605
8EVT|1|A1|U|1606
8EVT|1|A1|U|1607
8EVT|1|A1|C|1608

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AX

60S ribosomal protein L25

Chain Ag

60S ribosomal protein L34-A