3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GUUAAGAUUC
Length
10 nucleotides
Bulged bases
8EVT|1|A1|U|1606, 8EVT|1|A1|U|1607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EVT_035 not in the Motif Atlas
Homologous match to HL_5TBW_035
Geometric discrepancy: 0.0839
The information below is about HL_5TBW_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_35087.1
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8EVT|1|A1|G|1599
8EVT|1|A1|U|1600
8EVT|1|A1|U|1601
8EVT|1|A1|A|1602
8EVT|1|A1|A|1603
8EVT|1|A1|G|1604
8EVT|1|A1|A|1605
8EVT|1|A1|U|1606
8EVT|1|A1|U|1607
8EVT|1|A1|C|1608

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AR
60S ribosomal protein L19-A
Chain AX
60S ribosomal protein L25
Chain Ag
60S ribosomal protein L34-A

Coloring options:


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