HL_8EVT_039

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8EVT|1|A1|C|1762, 8EVT|1|A1|U|1763, 8EVT|1|A1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_039 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.3459

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8EVT|1|A1|C|1759
8EVT|1|A1|A|1760
8EVT|1|A1|C|1761
8EVT|1|A1|C|1762
8EVT|1|A1|U|1763
8EVT|1|A1|U|1764
8EVT|1|A1|U|1765
8EVT|1|A1|G|1766

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A