HL_8EVT_053

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

8EVT|1|A1|U|2537, 8EVT|1|A1|A|2540, 8EVT|1|A1|U|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|A|2535
8EVT|1|A1|A|2536
8EVT|1|A1|U|2537
8EVT|1|A1|U|2538
8EVT|1|A1|C|2539
8EVT|1|A1|A|2540
8EVT|1|A1|U|2541
8EVT|1|A1|U|2542
8EVT|1|A1|U|2543
8EVT|1|A1|U|2544

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ag

60S ribosomal protein L34-A

Chain BB

RPS1A isoform 1