HL_8EVT_055

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8EVT|1|A1|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0801

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8EVT|1|A1|C|2616
8EVT|1|A1|U|2617
8EVT|1|A1|G|2618
8EVT|1|A1|OMG|2619
8EVT|1|A1|G|2620
8EVT|1|A1|G|2621
8EVT|1|A1|C|2622
8EVT|1|A1|G|2623
8EVT|1|A1|G|2624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain Ab

RPL29 isoform 1