HL_8EVT_072

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8EVT|1|A1|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_072 not in the Motif Atlas

Homologous match to HL_5TBW_071

Geometric discrepancy: 0.2777

The information below is about HL_5TBW_071

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8EVT|1|A1|C|3350
8EVT|1|A1|U|3351
8EVT|1|A1|U|3352
8EVT|1|A1|G|3353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A