HL_8EVT_081

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EVT|1|B5|C|191, 8EVT|1|B5|U|192, 8EVT|1|B5|U|193, 8EVT|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.237

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EVT|1|B5|C|186
8EVT|1|B5|G|187
8EVT|1|B5|A|188
8EVT|1|B5|C|189
8EVT|1|B5|C|190
8EVT|1|B5|C|191
8EVT|1|B5|U|192
8EVT|1|B5|U|193
8EVT|1|B5|U|194
8EVT|1|B5|G|195
8EVT|1|B5|G|196
8EVT|1|B5|A|197
8EVT|1|B5|A|198
8EVT|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A