HL_8EVT_092

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGCCGGUCGGAUUUCC

Length

16 nucleotides

Bulged bases

8EVT|1|B5|G|656, 8EVT|1|B5|C|658, 8EVT|1|B5|G|676, 8EVT|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|B5|G|651
8EVT|1|B5|G|652
8EVT|1|B5|C|653
8EVT|1|B5|C|654
8EVT|1|B5|G|655
8EVT|1|B5|G|656
8EVT|1|B5|U|657
8EVT|1|B5|C|658
8EVT|1|B5|G|676
8EVT|1|B5|G|677
8EVT|1|B5|A|678
8EVT|1|B5|U|679
8EVT|1|B5|U|680
8EVT|1|B5|U|681
8EVT|1|B5|C|682
8EVT|1|B5|C|683

Current chains

Chain B5

18S rRNA

Nearby chains