HL_8EVT_093

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

8EVT|1|B5|A|707, 8EVT|1|B5|G|712, 8EVT|1|B5|U|715, 8EVT|1|B5|C|716, 8EVT|1|B5|U|718, 8EVT|1|B5|U|719, 8EVT|1|B5|U|721, 8EVT|1|B5|G|722, 8EVT|1|B5|C|724, 8EVT|1|B5|C|726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|B5|G|703
8EVT|1|B5|C|704
8EVT|1|B5|U|705
8EVT|1|B5|A|706
8EVT|1|B5|A|707
8EVT|1|B5|C|708
8EVT|1|B5|C|709
8EVT|1|B5|U|710
8EVT|1|B5|U|711
8EVT|1|B5|G|712
8EVT|1|B5|A|713
8EVT|1|B5|G|714
8EVT|1|B5|U|715
8EVT|1|B5|C|716
8EVT|1|B5|C|717
8EVT|1|B5|U|718
8EVT|1|B5|U|719
8EVT|1|B5|G|720
8EVT|1|B5|U|721
8EVT|1|B5|G|722
8EVT|1|B5|G|723
8EVT|1|B5|C|724
8EVT|1|B5|U|725
8EVT|1|B5|C|726
8EVT|1|B5|U|727
8EVT|1|B5|U|728
8EVT|1|B5|G|729
8EVT|1|B5|G|730
8EVT|1|B5|C|731
8EVT|1|B5|G|732
8EVT|1|B5|A|733
8EVT|1|B5|A|734
8EVT|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A