HL_8EVT_094
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8EVT|1|B5|G|765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVT_094 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.1053
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8EVT|1|B5|U|764
8EVT|1|B5|G|765
8EVT|1|B5|U|766
8EVT|1|B5|U|767
8EVT|1|B5|C|768
8EVT|1|B5|A|769
8EVT|1|B5|A|770
8EVT|1|B5|A|771
8EVT|1|B5|G|772
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
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