HL_8EVT_095

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8EVT|1|B5|U|779, 8EVT|1|B5|U|781, 8EVT|1|B5|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_095 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3411

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8EVT|1|B5|C|777
8EVT|1|B5|G|778
8EVT|1|B5|U|779
8EVT|1|B5|A|780
8EVT|1|B5|U|781
8EVT|1|B5|U|782
8EVT|1|B5|G|783

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BJ

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S24-A