HL_8EVT_115

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_115 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.4242

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVT|1|B5|A|829
8EVT|1|B5|U|830
8EVT|1|B5|U|831
8EVT|1|B5|U|832
8EVT|1|B5|U|833
8EVT|1|B5|G|834
8EVT|1|B5|U|835
8EVT|1|B5|U|836
8EVT|1|B5|G|837
8EVT|1|B5|G|838
8EVT|1|B5|U|839
8EVT|1|B5|U|840
8EVT|1|B5|U|841
8EVT|1|B5|C|842
8EVT|1|B5|U|843

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A