HL_8EWB_023
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUCCGGGGUCACCUUGA
- Length
- 17 nucleotides
- Bulged bases
- 8EWB|1|A1|C|1016, 8EWB|1|A1|G|1018, 8EWB|1|A1|G|1020
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWB|1|A1|U|1014
8EWB|1|A1|U|1015
8EWB|1|A1|C|1016
8EWB|1|A1|C|1017
8EWB|1|A1|G|1018
8EWB|1|A1|G|1019
8EWB|1|A1|G|1020
8EWB|1|A1|G|1021
8EWB|1|A1|U|1022
8EWB|1|A1|C|1023
8EWB|1|A1|A|1030
8EWB|1|A1|C|1031
8EWB|1|A1|C|1032
8EWB|1|A1|U|1033
8EWB|1|A1|U|1034
8EWB|1|A1|G|1035
8EWB|1|A1|A|1036
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- RPL10 isoform 1
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
Coloring options: