HL_8EWB_024

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.4204

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8EWB|1|A1|C|1076
8EWB|1|A1|U|1077
8EWB|1|A1|U|1078
8EWB|1|A1|A|1079
8EWB|1|A1|A|1080
8EWB|1|A1|U|1081
8EWB|1|A1|U|1082
8EWB|1|A1|G|1083

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

RPL5 isoform 1

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1