HL_8EWB_033

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0599

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8EWB|1|A1|G|1544
8EWB|1|A1|A|1545
8EWB|1|A1|A|1546
8EWB|1|A1|G|1547
8EWB|1|A1|C|1548
8EWB|1|A1|U|1549

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L15-A

Chain Aj

60S ribosomal protein L37-A