HL_8EWB_037

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8EWB|1|A1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.0838

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8EWB|1|A1|G|1680
8EWB|1|A1|U|1681
8EWB|1|A1|U|1682
8EWB|1|A1|A|1683
8EWB|1|A1|U|1684
8EWB|1|A1|C|1685
8EWB|1|A1|U|1686
8EWB|1|A1|U|1687
8EWB|1|A1|U|1688

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A