HL_8EWB_044

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGGGUACG

Length

8 nucleotides

Bulged bases

8EWB|1|A1|G|1954, 8EWB|1|A1|U|1955, 8EWB|1|A1|A|2093

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_044 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1459

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8EWB|1|A1|C|1951
8EWB|1|A1|G|1952
8EWB|1|A1|G|1953
8EWB|1|A1|G|1954
8EWB|1|A1|U|1955
8EWB|1|A1|A|2093
8EWB|1|A1|C|2094
8EWB|1|A1|G|2095

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BI

40S ribosomal protein S8-A