3D structure

PDB id
8EWB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.87 Å

Loop

Sequence
U(OMU)UCAG(OMU)GUGA
Length
11 nucleotides
Bulged bases
8EWB|1|A1|A|2727
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EWB|1|A1|U|2723
8EWB|1|A1|OMU|2724
8EWB|1|A1|U|2725
8EWB|1|A1|C|2726
8EWB|1|A1|A|2727
8EWB|1|A1|G|2728
8EWB|1|A1|OMU|2729
8EWB|1|A1|G|2730
8EWB|1|A1|U|2731
8EWB|1|A1|G|2732
8EWB|1|A1|A|2733

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AQ
60S ribosomal protein L18-A
Chain AT
60S ribosomal protein L21-A
Chain Aa
60S ribosomal protein L28
Chain Ab
RPL29 isoform 1
Chain Ao
60S ribosomal protein L42-A

Coloring options:

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