HL_8EWB_071

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8EWB|1|A1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0794

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8EWB|1|A1|G|3303
8EWB|1|A1|U|3304
8EWB|1|A1|A|3305
8EWB|1|A1|U|3306
8EWB|1|A1|A|3307
8EWB|1|A1|C|3308
8EWB|1|A1|G|3309
8EWB|1|A1|A|3310
8EWB|1|A1|C|3311

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A