HL_8EWB_075
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8EWB|1|A4|U|81, 8EWB|1|A4|C|84, 8EWB|1|A4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWB_075 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.3266
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EWB|1|A4|U|69
8EWB|1|A4|G|70
8EWB|1|A4|A|71
8EWB|1|A4|A|72
8EWB|1|A4|U|73
8EWB|1|A4|U|74
8EWB|1|A4|G|75
8EWB|1|A4|C|76
8EWB|1|A4|A|77
8EWB|1|A4|G|78
8EWB|1|A4|A|79
8EWB|1|A4|A|80
8EWB|1|A4|U|81
8EWB|1|A4|U|82
8EWB|1|A4|C|83
8EWB|1|A4|C|84
8EWB|1|A4|G|85
8EWB|1|A4|U|86
8EWB|1|A4|G|87
8EWB|1|A4|A|88
8EWB|1|A4|A|89
Current chains
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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