HL_8EWB_079

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8EWB|1|B5|U|74, 8EWB|1|B5|U|77, 8EWB|1|B5|A|78

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_079 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1182

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8EWB|1|B5|C|70
8EWB|1|B5|A|71
8EWB|1|B5|A|72
8EWB|1|B5|U|73
8EWB|1|B5|U|74
8EWB|1|B5|U|75
8EWB|1|B5|A|76
8EWB|1|B5|U|77
8EWB|1|B5|A|78
8EWB|1|B5|C|79
8EWB|1|B5|A|80
8EWB|1|B5|G|81

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A