HL_8EWB_081

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EWB|1|B5|U|192, 8EWB|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3321

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EWB|1|B5|C|186
8EWB|1|B5|G|187
8EWB|1|B5|A|188
8EWB|1|B5|C|189
8EWB|1|B5|C|190
8EWB|1|B5|C|191
8EWB|1|B5|U|192
8EWB|1|B5|U|193
8EWB|1|B5|U|194
8EWB|1|B5|G|195
8EWB|1|B5|G|196
8EWB|1|B5|A|197
8EWB|1|B5|A|198
8EWB|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A