HL_8EWB_091
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWB_091 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1151
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EWB|1|B5|A|520
8EWB|1|B5|A|521
8EWB|1|B5|U|522
8EWB|1|B5|G|523
8EWB|1|B5|U|524
8EWB|1|B5|A|525
8EWB|1|B5|A|526
8EWB|1|B5|A|527
8EWB|1|B5|U|528
8EWB|1|B5|A|529
8EWB|1|B5|C|530
8EWB|1|B5|C|531
8EWB|1|B5|U|532
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
Coloring options: