HL_8EWB_093

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EWB|1|B5|G|656, 8EWB|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|U|649
8EWB|1|B5|U|650
8EWB|1|B5|G|651
8EWB|1|B5|G|652
8EWB|1|B5|C|653
8EWB|1|B5|C|654
8EWB|1|B5|G|655
8EWB|1|B5|G|656
8EWB|1|B5|U|657
8EWB|1|B5|C|658
8EWB|1|B5|G|676
8EWB|1|B5|G|677
8EWB|1|B5|A|678
8EWB|1|B5|U|679
8EWB|1|B5|U|680
8EWB|1|B5|U|681
8EWB|1|B5|C|682
8EWB|1|B5|C|683
8EWB|1|B5|A|684
8EWB|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1