HL_8EWB_099

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_099 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0768

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8EWB|1|B5|C|937
8EWB|1|B5|G|938
8EWB|1|B5|A|939
8EWB|1|B5|A|940
8EWB|1|B5|A|941
8EWB|1|B5|G|942

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain Ba

RPS26B isoform 1