HL_8EWB_115

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACGGUG

Length

25 nucleotides

Bulged bases

8EWB|1|EC|A|6791, 8EWB|1|EC|A|6792, 8EWB|1|EC|C|6794

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|EC|C|6785
8EWB|1|EC|A|6786
8EWB|1|EC|U|6787
8EWB|1|EC|C|6788
8EWB|1|EC|G|6789
8EWB|1|EC|A|6790
8EWB|1|EC|A|6791
8EWB|1|EC|A|6792
8EWB|1|EC|A|6793
8EWB|1|EC|C|6794
8EWB|1|EC|U|6795
8EWB|1|EC|C|6796
8EWB|1|EC|U|6797
8EWB|1|EC|C|6798
8EWB|1|EC|C|6799
8EWB|1|EC|G|6800
8EWB|1|EC|A|6801
8EWB|1|EC|A|6802
8EWB|1|EC|C|6803
8EWB|1|EC|A|6804
8EWB|1|EC|C|6805
8EWB|1|EC|G|6808
8EWB|1|EC|G|6809
8EWB|1|EC|U|6810
8EWB|1|EC|G|6811

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain Ao

60S ribosomal protein L42-A