HL_8EWB_116

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUACGUGUA

Length

9 nucleotides

Bulged bases

8EWB|1|EC|G|6851

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|EC|U|6834
8EWB|1|EC|U|6835
8EWB|1|EC|A|6849
8EWB|1|EC|C|6850
8EWB|1|EC|G|6851
8EWB|1|EC|U|6852
8EWB|1|EC|G|6853
8EWB|1|EC|U|6854
8EWB|1|EC|A|6855

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains