HL_8EWB_117
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUGGGCAA
- Length
- 8 nucleotides
- Bulged bases
- 8EWB|1|EC|U|6904
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWB_117 not in the Motif Atlas
- Geometric match to HL_7RQB_014
- Geometric discrepancy: 0.1831
- The information below is about HL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96598.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 15
Unit IDs
8EWB|1|EC|U|6903
8EWB|1|EC|U|6904
8EWB|1|EC|G|6905
8EWB|1|EC|G|6906
8EWB|1|EC|G|6907
8EWB|1|EC|C|6908
8EWB|1|EC|A|6909
8EWB|1|EC|A|6910
Current chains
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BQ
- 40S ribosomal protein S16-A
- Chain DC
- Elongation factor 2
Coloring options: