HL_8EWB_125

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_125 not in the Motif Atlas

Geometric match to HL_5J7L_163

Geometric discrepancy: 0.2575

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EWB|1|B5|A|829
8EWB|1|B5|U|830
8EWB|1|B5|U|831
8EWB|1|B5|U|832
8EWB|1|B5|U|833
8EWB|1|B5|G|834
8EWB|1|B5|U|835
8EWB|1|B5|U|836
8EWB|1|B5|G|837
8EWB|1|B5|G|838
8EWB|1|B5|U|839
8EWB|1|B5|U|840
8EWB|1|B5|U|841
8EWB|1|B5|C|842
8EWB|1|B5|U|843

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A