HL_8EWC_020

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

G(A2M)CGUGCAAAUC

Length

12 nucleotides

Bulged bases

8EWC|1|A1|U|879, 8EWC|1|A1|A|883

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|G|875
8EWC|1|A1|A2M|876
8EWC|1|A1|C|877
8EWC|1|A1|G|878
8EWC|1|A1|U|879
8EWC|1|A1|G|880
8EWC|1|A1|C|881
8EWC|1|A1|A|882
8EWC|1|A1|A|883
8EWC|1|A1|A|884
8EWC|1|A1|U|885
8EWC|1|A1|C|886

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A