HL_8EWC_024

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3603

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8EWC|1|A1|C|1076
8EWC|1|A1|U|1077
8EWC|1|A1|U|1078
8EWC|1|A1|A|1079
8EWC|1|A1|A|1080
8EWC|1|A1|U|1081
8EWC|1|A1|U|1082
8EWC|1|A1|G|1083

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

RPL5 isoform 1

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1