HL_8EWC_079

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8EWC|1|B5|U|73, 8EWC|1|B5|U|74, 8EWC|1|B5|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_079 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1103

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8EWC|1|B5|C|70
8EWC|1|B5|A|71
8EWC|1|B5|A|72
8EWC|1|B5|U|73
8EWC|1|B5|U|74
8EWC|1|B5|U|75
8EWC|1|B5|A|76
8EWC|1|B5|U|77
8EWC|1|B5|A|78
8EWC|1|B5|C|79
8EWC|1|B5|A|80
8EWC|1|B5|G|81

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A