HL_8EWC_081

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EWC|1|B5|C|191, 8EWC|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_081 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2582

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EWC|1|B5|C|186
8EWC|1|B5|G|187
8EWC|1|B5|A|188
8EWC|1|B5|C|189
8EWC|1|B5|C|190
8EWC|1|B5|C|191
8EWC|1|B5|U|192
8EWC|1|B5|U|193
8EWC|1|B5|U|194
8EWC|1|B5|G|195
8EWC|1|B5|G|196
8EWC|1|B5|A|197
8EWC|1|B5|A|198
8EWC|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A