HL_8EWC_088
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAU(OMC)CAAGG(A2M)AG
- Length
- 12 nucleotides
- Bulged bases
- 8EWC|1|B5|A|416
- QA status
- Modified nucleotides: OMC, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|B5|C|411
8EWC|1|B5|A|412
8EWC|1|B5|U|413
8EWC|1|B5|OMC|414
8EWC|1|B5|C|415
8EWC|1|B5|A|416
8EWC|1|B5|A|417
8EWC|1|B5|G|418
8EWC|1|B5|G|419
8EWC|1|B5|A2M|420
8EWC|1|B5|A|421
8EWC|1|B5|G|422
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- RPL24A isoform 1
- Chain BG
- 40S ribosomal protein S6-A
- Chain BY
- 40S ribosomal protein S24-A
Coloring options: