HL_8EWC_091
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWC_091 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1418
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EWC|1|B5|A|520
8EWC|1|B5|A|521
8EWC|1|B5|U|522
8EWC|1|B5|G|523
8EWC|1|B5|U|524
8EWC|1|B5|A|525
8EWC|1|B5|A|526
8EWC|1|B5|A|527
8EWC|1|B5|U|528
8EWC|1|B5|A|529
8EWC|1|B5|C|530
8EWC|1|B5|C|531
8EWC|1|B5|U|532
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
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